ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 110.27 7.83 1.45 42.09 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756336.1 ENST00000756336.1_109_172_+ 109–172 96.94 6.88 1.28 82.15 ENST00000756336 lncRNA HT-29 (Cell line)
ENST00000756452.1 ENST00000756452.1_116_129_+ 116–129 130.00 93.53 1.71 100.0 ENST00000756452 lncRNA HT-29 (Cell line)
ENST00000760093.1 ENST00000760093.1_77_108_+ 77–108 1.00 0.54 0.01 100.0 ENST00000760093 lncRNA HT-29 (Cell line)
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 12.00 6.52 0.16 100.0 ENST00000760093 lncRNA HT-29 (Cell line)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 2.00 100.00 0.03 100.0 SNHG14-356 lncRNA HT-29 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 1034.00 31.81 13.64 89.99 LINC02806-241 lncRNA HT-29 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 120.00 3.69 1.58 100.0 LINC02806-241 lncRNA HT-29 (Cell line)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 880.00 27.07 11.61 76.26 LINC02806-241 lncRNA HT-29 (Cell line)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 72.00 73.47 0.95 100.0 EHBP1-AS1-210 lncRNA HT-29 (Cell line)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 25.00 27.17 0.33 100.0 ENST00000770398 lncRNA HT-29 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 4.00 4.35 0.05 100.0 ENST00000770398 lncRNA HT-29 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 7.00 7.61 0.09 100.0 ENST00000770398 lncRNA HT-29 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 330.00 45.39 4.35 74.16 ENST00000771298 lncRNA HT-29 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 20.00 2.75 0.26 100.0 ENST00000771298 lncRNA HT-29 (Cell line)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 6.00 0.83 0.08 100.0 ENST00000771298 lncRNA HT-29 (Cell line)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 7.00 1.46 0.09 100.0 ENST00000772672 lncRNA HT-29 (Cell line)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 172.00 35.83 2.27 100.0 ENST00000772672 lncRNA HT-29 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 18.00 26.09 0.24 100.0 ENST00000773843 lncRNA HT-29 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 27468.00 19.69 362.27 74.67 SNHG12-223 lncRNA HT-29 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 107.00 0.08 1.41 100.0 SNHG12-223 lncRNA HT-29 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 111304.00 79.78 1467.95 98.81 SNHG12-223 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 210.00 0.04 2.77 98.13 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 37.00 0.01 0.49 100.0 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 518935.00 94.94 6844.05 95.46 SNHG25-206 lncRNA HT-29 (Cell line)