ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 69.00 0.02 0.91 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 24.00 0.01 0.32 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 190.00 0.06 2.51 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 179814.00 60.06 2371.50 98.37 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 595.00 0.20 7.85 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 633.00 0.21 8.35 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 119.00 0.04 1.57 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 2183.00 0.73 28.79 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 11.00 0.00 0.15 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 6.00 0.00 0.08 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 71.00 0.02 0.94 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 67.00 0.02 0.88 61.47 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 214.00 0.07 2.82 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 12403.00 4.14 163.58 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 6661.00 2.22 87.85 99.58 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 42192.00 14.09 556.46 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 23.00 0.01 0.30 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 2996.00 1.00 39.51 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 36314.00 12.13 478.93 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 634.00 0.21 8.36 100.0 GAS5-230 retained intron HT-29 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 7.00 2.55 0.09 100.0 FTX-219 lncRNA HT-29 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 194.00 70.55 2.56 85.46 FTX-219 lncRNA HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 54.00 10.95 0.71 58.06 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 31.00 6.29 0.41 63.27 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 89.00 18.05 1.17 83.18 CTC1-214 protein coding HT-29 (Cell line)