ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 71.00 0.03 0.94 100.0 RPL21-209 retained intron HT-29 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 110.00 49.55 1.45 100.0 GABRE-209 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 17625.00 28.73 232.45 93.11 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 42.00 0.07 0.55 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 4.00 0.01 0.05 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 838.00 1.37 11.05 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 308.00 0.50 4.06 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 108.00 0.18 1.42 16.98 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 39107.00 63.74 515.77 99.53 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 2.00 0.00 0.03 100.0 RPL13A-212 retained intron HT-29 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 22.00 0.31 0.29 100.0 RPL7A-207 protein coding CDS not defined HT-29 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 3.00 0.04 0.04 100.0 RPL7A-207 protein coding CDS not defined HT-29 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 5019.00 70.90 66.19 76.49 RPL7A-207 protein coding CDS not defined HT-29 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.01 0.01 100.0 RPL7A-207 protein coding CDS not defined HT-29 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 206.00 3.96 2.72 49.52 RN7SL2-201 misc RNA HT-29 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 500.00 9.62 6.59 100.0 RN7SL2-201 misc RNA HT-29 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 44.00 0.17 0.58 100.0 NOP56-217 protein coding CDS not defined HT-29 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 24736.00 96.14 326.23 99.03 NOP56-217 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 18.00 0.03 0.24 62.07 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 210.00 0.33 2.77 100.0 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 368.00 0.58 4.85 100.0 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 11.00 0.02 0.15 37.93 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 56996.00 90.00 751.70 98.12 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 2204.00 3.48 29.07 84.25 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 13.00 0.02 0.17 100.0 RABGGTB-213 protein coding CDS not defined HT-29 (Cell line)