ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 153581.00 97.03 653.99 99.53 ZFAS1-238 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 66.00 0.04 0.28 100.0 ZFAS1-238 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 45.00 0.03 0.19 100.0 ZFAS1-238 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 1002.00 0.63 4.27 100.0 ZFAS1-238 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 4208.00 26.05 17.92 100.0 ZFAS1-242 lncRNA gastroesophageal sphincter (Tissue)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 11331.00 70.15 48.25 100.0 ZFAS1-242 lncRNA gastroesophageal sphincter (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 641.00 40.04 2.73 100.0 ENST00000837997 lncRNA gastroesophageal sphincter (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 519.00 32.42 2.21 100.0 ENST00000837997 lncRNA gastroesophageal sphincter (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 7024.00 74.60 29.91 80.17 ENST00000839036 lncRNA gastroesophageal sphincter (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 94.00 12.42 0.40 100.0 ENST00000849527 lncRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 23180.00 90.06 98.71 97.21 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 7.00 0.03 0.03 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 71.00 0.06 0.30 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 484.00 46.76 2.06 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 126.00 12.17 0.54 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 441.00 20.54 1.88 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 51.00 1.13 0.22 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 1782.00 62.13 7.59 84.86 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 275.00 0.25 1.17 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 773.00 15.10 3.29 86.95 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 14.00 0.27 0.06 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 733.00 14.32 3.12 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 329.00 20.74 1.40 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 330.00 0.07 1.41 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 6471.00 1.40 27.56 87.01 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA gastroesophageal sphincter (Tissue)