ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 39332.00 2.91 167.49 78.57 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 1.00 0.00 0.00 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 341805.00 25.31 1455.50 99.04 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 52.00 0.00 0.22 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 41.00 0.00 0.17 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 3.00 0.00 0.01 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 32899.00 2.44 140.09 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 826.00 0.06 3.52 76.84 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1342.51 0.10 5.72 36.03 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 537.00 0.04 2.29 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 735.00 0.05 3.13 61.15 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 294.00 0.02 1.25 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 377.00 0.03 1.61 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 46.00 0.00 0.20 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 35626.00 28.63 151.71 100.0 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 43785.00 35.19 186.45 90.52 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 28418.00 22.84 121.01 81.71 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1178.00 0.22 5.02 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 251976.97 47.44 1072.99 54.17 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 10.00 0.00 0.04 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 278.00 0.05 1.18 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 257918.23 48.55 1098.29 51.16 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 9432.00 1.78 40.16 90.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 21.00 0.00 0.09 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 778.00 0.15 3.31 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)