ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 466.00 0.09 1.98 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 4900.00 0.92 20.87 95.48 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 409.00 11.13 1.74 79.88 SNHG14-323 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 107824.00 87.72 459.14 96.96 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 1070.00 0.87 4.56 53.29 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 954.00 0.78 4.06 55.3 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 5944.00 4.84 25.31 91.21 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 3.00 0.00 0.01 100.0 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 11593.00 66.63 49.37 92.63 SNHG14-336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 5172.00 29.72 22.02 48.39 SNHG14-336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 9700.00 82.18 41.31 96.34 SNHG14-341 lncRNA gastroesophageal sphincter (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 3057.00 35.69 13.02 100.0 NCL-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 5.00 1.31 0.02 100.0 NCL-216 retained intron gastroesophageal sphincter (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 409.00 41.86 1.74 100.0 FMN2-209 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 5.00 0.11 0.02 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 159.00 3.42 0.68 31.8 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 121.00 2.60 0.52 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 548.00 11.78 2.33 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 216.00 4.64 0.92 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 341.00 7.33 1.45 68.2 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 87.00 14.95 0.37 100.0 SNHG10-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 15800.16 46.08 67.28 47.73 SNHG19-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 17413.66 50.78 74.15 65.16 SNHG19-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 5598.00 76.23 23.84 100.0 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1139.00 15.51 4.85 83.81 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)