ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 606.00 0.16 2.58 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 113791.00 30.79 484.55 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 154.00 0.04 0.66 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 92.00 12.74 0.39 100.0 FTX-219 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 379.00 52.49 1.61 92.21 FTX-219 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 785.00 3.65 3.34 79.05 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 996.00 4.63 4.24 55.74 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 9685.00 44.98 41.24 83.89 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 208.00 0.97 0.89 20.95 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 4151.00 19.28 17.68 72.12 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 768.00 3.57 3.27 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 1118.00 5.19 4.76 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 1086.00 5.04 4.62 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 975.00 2.01 4.15 69.49 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 4008.00 8.26 17.07 90.29 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 272.00 0.56 1.16 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1672.00 3.44 7.12 49.72 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 48.00 0.10 0.20 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 94.00 0.19 0.40 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 1110.00 2.29 4.73 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 312.00 0.64 1.33 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 252.00 0.52 1.07 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 5666.00 11.67 24.13 42.9 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 529.00 1.09 2.25 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 21042.00 43.34 89.60 85.89 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)