ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 597.00 6.61 2.54 100.0 WDR74-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 562.00 6.23 2.39 73.56 WDR74-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 5100.00 82.21 21.72 100.0 HSPA8-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 179.00 10.73 0.76 100.0 SCARNA9-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 47229.00 96.67 201.11 100.0 TAF1D-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 345.00 0.71 1.47 100.0 TAF1D-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 966.00 60.75 4.11 100.0 HSPA8-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 34.00 2.14 0.14 100.0 HSPA8-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 59.00 14.08 0.25 100.0 RPS2-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 1328851.00 74.10 5658.60 75.01 ENST00000548801 lncRNA gastroesophageal sphincter (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 81.00 2.40 0.34 100.0 ENST00000554988 lncRNA gastroesophageal sphincter (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 200.00 5.94 0.85 100.0 ENST00000554988 lncRNA gastroesophageal sphincter (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 1072.00 31.83 4.56 100.0 ENST00000554988 lncRNA gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 146.00 0.56 0.62 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 16132.00 61.56 68.69 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 8711.00 33.24 37.09 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 282.00 1.08 1.20 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 6773.00 99.65 28.84 100.0 TEKT4P2-201 transcribed unprocessed pseudogene gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 195.00 0.29 0.83 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 30.00 0.04 0.13 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 490.00 0.73 2.09 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 63164.00 94.28 268.97 97.72 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 430.00 1.32 1.83 100.0 ENST00000563103 lncRNA gastroesophageal sphincter (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 192.00 4.70 0.82 100.0 RPL4-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 2931.00 71.70 12.48 100.0 RPL4-207 retained intron gastroesophageal sphincter (Tissue)