ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1331.00 0.67 5.67 75.75 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 958.00 0.48 4.08 44.5 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 35055.00 17.54 149.27 80.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 34803.00 98.01 148.20 100.0 RPS8-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 439.00 34.79 1.87 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 237.00 18.78 1.01 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 137.00 10.86 0.58 100.0 RPL7A-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 3823.00 0.66 16.28 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 821.00 0.14 3.50 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 97641.00 16.79 415.78 98.7 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 475861.00 81.82 2026.34 97.09 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 11.00 0.00 0.05 100.0 RPL21-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 32.00 36.78 0.14 100.0 GABRE-209 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1342.00 2.59 5.71 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 21687.00 41.80 92.35 78.82 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 128.00 0.25 0.55 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 56.00 0.11 0.24 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 392.00 0.76 1.67 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 238.00 0.46 1.01 94.82 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 17612.00 33.95 75.00 99.65 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 14.00 0.03 0.06 100.0 RPL13A-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.01 0.00 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 5176.00 63.29 22.04 81.63 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 161.00 1.97 0.69 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 387.00 4.73 1.65 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)