ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 18.00 0.38 0.08 3.2 RN7SL2-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 372.00 7.91 1.58 100.0 RN7SL2-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 552.00 92.77 2.35 100.0 RGS11-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 134573.00 68.59 573.05 81.32 NOP56-217 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 20944.00 10.67 89.19 83.6 NOP56-217 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 394.00 0.37 1.68 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 70517.00 66.69 300.28 95.23 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 20469.00 19.36 87.16 85.68 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 215.00 0.20 0.92 54.85 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 642.00 0.61 2.73 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1154.00 1.09 4.91 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 177.00 0.17 0.75 45.15 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 4139.00 79.00 17.62 100.0 GNL3-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 735.00 14.03 3.13 100.0 GNL3-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 183.00 3.60 0.78 100.0 RPL5-205 retained intron gastroesophageal sphincter (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 3929.00 77.39 16.73 100.0 RPL5-205 retained intron gastroesophageal sphincter (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 37.00 1.05 0.16 100.0 ZBED9-AS1-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3122.00 93.08 13.29 100.0 RPS3A-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 16066.00 98.78 68.41 100.0 COX7C-203 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 3910.94 19.70 16.65 43.22 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 8366.78 42.14 35.63 71.22 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 3635.00 18.31 15.48 99.56 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2288.00 11.52 9.74 100.0 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 38685.00 62.51 164.73 89.41 RACK1-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 21666.00 35.01 92.26 64.67 RACK1-230 retained intron gastroesophageal sphincter (Tissue)