ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 12754.00 87.87 54.31 96.77 SNORD126-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 12565.00 94.73 53.51 97.6 SNORD124-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 201.00 15.30 0.86 100.0 SNHG12-201 retained intron gastroesophageal sphincter (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3400.00 32.18 14.48 100.0 RPL3-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1318.00 12.48 5.61 41.71 RPL3-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 5696.00 96.99 24.26 100.0 SMC1A-204 retained intron gastroesophageal sphincter (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 34167.00 90.66 145.49 98.22 RABGGTB-208 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 5630.00 52.18 23.97 75.31 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 471.00 4.37 2.01 100.0 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1217.00 11.28 5.18 100.0 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1784.00 79.22 7.60 100.0 RPS8-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 5265.00 0.45 22.42 100.0 RPL13-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 1142386.00 98.59 4864.59 99.7 RPL13-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 2643.00 1.32 11.25 86.86 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 35055.00 17.54 149.27 80.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 384.00 0.19 1.64 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 141140.00 70.62 601.01 98.12 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 894.00 0.45 3.81 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 435.00 0.22 1.85 37.12 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 12.00 0.01 0.05 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 748.00 0.37 3.19 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 3920.00 1.96 16.69 49.6 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 255.00 0.13 1.09 45.45 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 958.00 0.48 4.08 44.5 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 254.00 0.13 1.08 53.47 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)