ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 449.00 21.35 1.91 58.31 MIR194-2HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 48.00 1.11 0.20 100.0 LINC01783-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 4.00 80.00 0.02 100.0 RPS7P15-201 processed pseudogene gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 746.00 18.91 3.18 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 6.00 0.15 0.03 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 988.00 25.04 4.21 92.42 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 80.00 2.03 0.34 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 340.00 8.62 1.45 100.0 SNORD62B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 15.00 100.00 0.06 100.0 MRPL32-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 9.00 90.00 0.04 100.0 ENST00000436739 lncRNA gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 71.00 6.18 0.30 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 36.00 3.14 0.15 55.38 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 581.00 50.61 2.47 92.52 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 88.00 7.67 0.37 100.0 TMEM107-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1576.00 81.53 6.71 99.81 SNHG16-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 51.00 2.64 0.22 100.0 SNHG16-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 38.00 10.35 0.16 100.0 SNHG14-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 64676.00 87.07 275.41 96.53 SNORD105B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 326.00 34.98 1.39 46.84 SNORD121B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 152359.00 97.87 648.79 99.22 SNORD127-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 9.00 0.01 0.04 100.0 SNORD127-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 19738.00 97.04 84.05 100.0 SNORD42B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 614.00 3.19 2.61 100.0 RNY4P25-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 281.00 71.14 1.20 100.0 SNORD121A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 12754.00 87.87 54.31 96.77 SNORD126-201 snoRNA gastroesophageal sphincter (Tissue)