ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 405.00 15.56 2.70 88.82 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 46.00 1.77 0.31 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 208.00 7.99 1.39 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 342.00 13.14 2.28 100.0 SNORD62B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 13.00 100.00 0.09 100.0 MRPL32-203 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 14.00 58.33 0.09 100.0 ENST00000436739 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 64.00 6.10 0.43 100.0 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 499.00 47.57 3.33 81.67 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 6.00 0.57 0.04 100.0 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 45.00 4.29 0.30 100.0 TMEM107-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 356.00 63.23 2.37 98.61 SNHG16-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 66.00 11.72 0.44 100.0 SNHG16-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 26.00 6.40 0.17 100.0 SNHG14-207 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 18784.00 82.62 125.17 95.49 SNORD105B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 130.00 28.45 0.87 45.77 SNORD121B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 64109.00 97.63 427.21 99.26 SNORD127-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 7.00 0.01 0.05 100.0 SNORD127-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 5437.00 95.40 36.23 100.0 SNORD42B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 444.00 8.34 2.96 100.0 RNY4P25-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 88.00 66.17 0.59 100.0 SNORD121A-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 596.00 18.54 3.97 74.13 SNORD126-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 2511.00 78.13 16.73 95.44 SNORD126-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 3758.00 87.89 25.04 92.47 SNORD124-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 53.00 7.55 0.35 100.0 SNHG12-201 retained intron esophagus muscularis mucosa (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 389.00 4.67 2.59 67.53 RPL3-212 retained intron esophagus muscularis mucosa (Tissue)