ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3498.00 4.14 25.22 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 262.00 0.31 1.89 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 148.00 0.47 1.07 58.5 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 29973.00 95.22 216.13 98.42 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 115.00 0.37 0.83 44.92 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 310.00 0.98 2.24 90.91 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 254.00 32.44 1.83 100.0 FMN2-209 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 10.00 0.07 0.07 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 134.00 0.93 0.97 23.26 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 1059.00 7.35 7.64 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 3625.00 25.15 26.14 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 1776.00 12.32 12.81 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 442.00 3.07 3.19 76.74 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 1572.00 32.51 11.34 100.0 SNHG10-212 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 11997.00 65.79 86.51 100.0 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 3392.00 18.60 24.46 74.04 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 134.00 0.73 0.97 100.0 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 213.00 45.32 1.54 100.0 RPSA-216 retained intron upper lobe of left lung (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2364.00 7.56 17.05 84.37 MIR99AHG-370 lncRNA upper lobe of left lung (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 27120.00 86.76 195.56 97.42 MIR99AHG-370 lncRNA upper lobe of left lung (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 435.00 99.09 3.14 100.0 HPS4-237 retained intron upper lobe of left lung (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 28.00 80.00 0.20 100.0 MEG8-253 lncRNA upper lobe of left lung (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 101.00 53.44 0.73 100.0 MEG9-206 lncRNA upper lobe of left lung (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1951.00 12.35 14.07 100.0 DNAJC5-203 nonsense mediated decay upper lobe of left lung (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 1463.00 25.55 10.55 100.0 ENST00000707189 TEC upper lobe of left lung (Tissue)