ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 373384.00 48.98 2692.44 98.57 MIR486-1-201 miRNA upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 21551.00 68.09 155.40 99.96 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 502.00 1.59 3.62 100.0 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 2094.00 6.62 15.10 100.0 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 3207.00 10.13 23.13 66.44 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 4005.01 20.82 28.88 44.24 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 49.00 0.25 0.35 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 5062.00 26.32 36.50 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 32.00 0.17 0.23 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 4964.55 25.81 35.80 54.84 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 7.00 77.78 0.05 100.0 MIR7974-201 miRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 230.00 1.87 1.66 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 89.00 0.72 0.64 23.61 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 109.00 0.89 0.79 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 315.00 2.56 2.27 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 957.00 7.79 6.90 100.0 U2.3-201 snRNA upper lobe of left lung (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 401.00 3.42 2.89 100.0 U2.6-201 snRNA upper lobe of left lung (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 133.00 0.17 0.96 15.8 ENST00000619323 lncRNA upper lobe of left lung (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 74867.00 95.91 539.86 98.13 ENST00000619323 lncRNA upper lobe of left lung (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 504.00 28.72 3.63 100.0 SCARNA4-202 scaRNA upper lobe of left lung (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 1757.00 84.27 12.67 100.0 ENST00000625572 miRNA upper lobe of left lung (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 2992.00 91.11 21.58 100.0 ENST00000630615 snoRNA upper lobe of left lung (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 228.00 51.24 1.64 100.0 DMRT2-209 protein coding upper lobe of left lung (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 39.00 8.76 0.28 100.0 DMRT2-209 protein coding upper lobe of left lung (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 2065.00 62.75 14.89 100.0 SNORD98-201 snoRNA upper lobe of left lung (Tissue)