ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 5.00 0.40 0.04 100.0 SNORD53B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 383.00 30.64 2.76 36.34 SNORD53B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 82.00 30.48 0.59 100.0 ENST00000578036 lncRNA upper lobe of left lung (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 718.00 81.87 5.18 100.0 RPL23A-207 protein coding upper lobe of left lung (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 512.00 91.92 3.69 100.0 MIR744-201 miRNA upper lobe of left lung (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 86.00 71.67 0.62 100.0 MIR378C-201 miRNA upper lobe of left lung (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 3720.00 75.12 26.82 82.8 MIR142HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 11.00 0.22 0.08 100.0 MIR142HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 183.00 3.70 1.32 11.66 MIR142HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 265.21 0.03 1.91 58.8 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 190.32 0.02 1.37 49.56 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 721383.00 81.20 5201.82 88.18 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 163511.00 18.41 1179.06 91.45 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 3.00 2.00 0.02 100.0 MIR133A1HG-202 lncRNA upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2657.00 2.20 19.16 62.61 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 7912.00 6.55 57.05 32.61 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1456.00 1.21 10.50 100.0 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 97401.00 80.67 702.35 97.79 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 8500.00 7.04 61.29 95.01 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 641.00 31.53 4.62 37.6 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 69.00 3.39 0.50 100.0 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 31.00 1.52 0.22 100.0 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1557.00 4.91 11.23 100.0 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 15382.24 48.53 110.92 55.64 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 13304.04 41.98 95.93 45.76 RPL17-214 retained intron upper lobe of left lung (Tissue)