ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 576491.00 99.31 4157.02 99.92 SNORD43-201 snoRNA upper lobe of left lung (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 53.00 0.01 0.38 100.0 SNORD43-201 snoRNA upper lobe of left lung (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 108.00 31.58 0.78 100.0 MIR151B-201 miRNA upper lobe of left lung (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 22.00 0.63 0.16 100.0 SNORD3A-201 snoRNA upper lobe of left lung (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 4014.00 47.50 28.94 100.0 NSRP1-214 protein coding upper lobe of left lung (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 2518.00 29.80 18.16 74.63 NSRP1-214 protein coding upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2887.00 22.79 20.82 94.19 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 2118.00 16.72 15.27 87.48 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 3238.00 25.56 23.35 94.37 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 942.00 7.44 6.79 70.56 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 4.00 40.00 0.03 100.0 MIR122HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 18.00 9.09 0.13 100.0 ODAD3-204 nonsense mediated decay upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 2864.00 6.75 20.65 100.0 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 216.00 0.51 1.56 100.0 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 27211.00 64.11 196.22 73.63 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1229.00 38.38 8.86 100.0 C19orf48P-203 retained intron upper lobe of left lung (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 142.00 4.43 1.02 100.0 C19orf48P-203 retained intron upper lobe of left lung (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1210653.00 79.91 8729.90 81.4 CARMN-209 lncRNA upper lobe of left lung (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 1594.00 58.15 11.49 100.0 PPFIA1P1-201 processed pseudogene upper lobe of left lung (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 366.00 55.04 2.64 100.0 SNORD114-21-201 snoRNA upper lobe of left lung (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 167.00 25.11 1.20 100.0 SNORD114-21-201 snoRNA upper lobe of left lung (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 7146.00 97.56 51.53 100.0 MIR98-201 miRNA upper lobe of left lung (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 7.00 25.00 0.05 100.0 SNORD113-5-201 snoRNA upper lobe of left lung (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 496.00 96.50 3.58 100.0 MIR15A-201 miRNA upper lobe of left lung (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 912.00 58.50 6.58 100.0 SNHG21-206 retained intron upper lobe of left lung (Tissue)