ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 1257.00 3.73 9.06 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 19.00 0.06 0.14 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 30529.00 90.63 220.14 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 672.00 97.96 4.85 100.0 TEKT4P2-201 transcribed unprocessed pseudogene upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 52045.00 87.08 375.29 93.59 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 971.00 1.62 7.00 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 11.00 0.02 0.08 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 106.00 0.18 0.76 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 952.00 1.59 6.86 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 1009.00 1.26 7.28 100.0 ENST00000563103 lncRNA upper lobe of left lung (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 8166.00 74.43 58.88 100.0 RPL4-207 retained intron upper lobe of left lung (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 514.00 4.68 3.71 100.0 RPL4-207 retained intron upper lobe of left lung (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 169233.00 88.85 1220.32 97.21 ENST00000565336 lncRNA upper lobe of left lung (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 12322.00 6.47 88.85 92.61 ENST00000565336 lncRNA upper lobe of left lung (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 6201.00 35.99 44.71 100.0 RBMX-210 retained intron upper lobe of left lung (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 4935.00 28.64 35.59 100.0 RBMX-210 retained intron upper lobe of left lung (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 127.00 0.74 0.92 17.96 RBMX-210 retained intron upper lobe of left lung (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 400.00 47.96 2.88 100.0 RPL4-214 retained intron upper lobe of left lung (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 2797.21 13.51 20.17 20.19 POLG-DT-202 lncRNA upper lobe of left lung (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 12490.44 60.32 90.07 85.9 POLG-DT-202 lncRNA upper lobe of left lung (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 115.00 0.56 0.83 100.0 POLG-DT-202 lncRNA upper lobe of left lung (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1040.00 30.81 7.50 100.0 ENST00000570843 lncRNA upper lobe of left lung (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1991.00 71.44 14.36 100.0 MIR497HG-207 lncRNA upper lobe of left lung (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 46704.00 97.79 336.78 98.46 MIR22HG-212 lncRNA upper lobe of left lung (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 671.00 53.68 4.84 63.66 SNORD53B-201 snoRNA upper lobe of left lung (Tissue)