ENCFF768XBE

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR539RDF
Description: Part of ENCODE experiment ENCSR539RDF. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 2469.00 85.26 17.80 100.0 RGS11-208 retained intron upper lobe of left lung (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 11390.00 76.89 82.13 92.16 NOP56-217 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 677.00 2.50 4.88 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 1343.00 4.95 9.68 58.24 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 6453.00 23.78 46.53 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 5710.00 21.05 41.17 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 963.00 3.55 6.94 41.76 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 3739.00 13.78 26.96 86.01 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 688.00 16.51 4.96 100.0 GNL3-211 retained intron upper lobe of left lung (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 3186.00 76.44 22.97 100.0 GNL3-211 retained intron upper lobe of left lung (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 215.00 40.41 1.55 100.0 RPL5-205 retained intron upper lobe of left lung (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 1435.00 17.80 10.35 100.0 ZBED9-AS1-201 lncRNA upper lobe of left lung (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3173.00 93.63 22.88 100.0 RPS3A-206 retained intron upper lobe of left lung (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 16605.00 98.59 119.74 100.0 COX7C-203 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 48499.00 34.52 349.72 99.76 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 22061.81 15.70 159.09 36.21 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 6113.00 4.35 44.08 100.0 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 55467.52 39.48 399.97 74.07 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 218.00 6.72 1.57 97.32 RACK1-230 retained intron upper lobe of left lung (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 7.00 0.22 0.05 46.67 RACK1-230 retained intron upper lobe of left lung (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 50.00 1.34 0.36 100.0 RNA5SP486-201 rRNA pseudogene upper lobe of left lung (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 5595.00 90.81 40.34 100.0 SCARNA5-201 scaRNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 4793.00 3.62 34.56 70.85 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 281.00 0.21 2.03 100.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 61.00 0.05 0.44 39.61 RNY4-201 misc RNA upper lobe of left lung (Tissue)