ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 206.00 2.57 0.63 100.0 RNY3-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 11732.00 31.75 35.96 98.97 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 9648.56 26.11 29.57 63.81 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 814.00 2.20 2.49 100.0 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 69.00 0.19 0.21 100.0 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 909.00 2.46 2.79 100.0 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 5425.00 14.68 16.63 90.64 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 5196.83 14.06 15.93 34.37 SNORD82-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 8900.00 94.46 27.28 96.15 MIR146B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 33.00 33.33 0.10 100.0 SNHG20-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 4.00 1.65 0.01 100.0 ATP5MK-205 protein coding gastroesophageal sphincter (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 75.00 30.86 0.23 100.0 ATP5MK-205 protein coding gastroesophageal sphincter (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 2.00 2.53 0.01 100.0 LINC01556-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 564.00 33.57 1.73 100.0 ATAD3A-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 17.00 44.74 0.05 100.0 ZMYM2-203 protein coding gastroesophageal sphincter (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 21.00 0.72 0.06 100.0 RNVU1-7-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 2317.00 71.01 7.10 100.0 SNORD24-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 400.00 64.31 1.23 100.0 Y_RNA.389-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 175.00 0.14 0.54 100.0 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 1610.00 1.27 4.93 77.89 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 121986.00 96.56 373.88 99.76 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 497.00 0.39 1.52 100.0 SNORD101-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 42290.00 97.73 129.62 100.0 SNORD37-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 944021.00 95.71 2893.35 99.44 SNORD59A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 565.00 73.86 1.73 100.0 SNORA7B-201 snoRNA gastroesophageal sphincter (Tissue)