ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 712.00 2.00 2.18 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 15.00 0.04 0.05 100.0 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 1533.00 83.68 4.70 100.0 B4GALT1-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 483.00 6.99 1.48 100.0 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 456.00 6.60 1.40 90.48 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 268.00 3.88 0.82 100.0 ENST00000722183 lncRNA gastroesophageal sphincter (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 2.00 20.00 0.01 100.0 MIR34BHG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 24826.00 88.84 76.09 91.23 THBS3-AS1-228 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 16627.00 85.82 50.96 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 412.00 2.13 1.26 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 117.00 0.60 0.36 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 192.00 0.99 0.59 100.0 SNHG16-266 lncRNA gastroesophageal sphincter (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 1.00 50.00 0.00 100.0 MEG8-261 lncRNA gastroesophageal sphincter (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 261.00 12.28 0.80 100.0 NR2F2-AS1-327 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 1221.00 3.28 3.74 46.62 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 1398.00 3.76 4.28 38.19 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 10241.00 27.53 31.39 100.0 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 1042.00 2.80 3.19 42.7 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 16275.00 43.75 49.88 100.0 ENST00000747675 lncRNA gastroesophageal sphincter (Tissue)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 35056.00 36.63 107.44 97.52 SNHG26-250 lncRNA gastroesophageal sphincter (Tissue)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 51801.00 54.13 158.77 98.78 SNHG26-250 lncRNA gastroesophageal sphincter (Tissue)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 485.00 9.09 1.49 100.0 LINC02422-207 lncRNA gastroesophageal sphincter (Tissue)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 544.00 19.77 1.67 100.0 ENST00000753088 lncRNA gastroesophageal sphincter (Tissue)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 8.00 0.29 0.02 100.0 ENST00000753088 lncRNA gastroesophageal sphincter (Tissue)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 1094.35 1.31 3.35 40.44 ENST00000756336 lncRNA gastroesophageal sphincter (Tissue)