ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 39.00 0.36 0.12 100.0 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 12.00 15.19 0.04 100.0 RPSA-216 retained intron gastroesophageal sphincter (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1203.00 6.61 3.69 87.81 MIR99AHG-370 lncRNA gastroesophageal sphincter (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 16050.00 88.16 49.19 97.96 MIR99AHG-370 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 114.00 98.28 0.35 100.0 HPS4-237 retained intron gastroesophageal sphincter (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 20.00 90.91 0.06 100.0 MEG8-253 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 88.00 45.60 0.27 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 3.00 1.55 0.01 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 4.00 2.07 0.01 100.0 MEG9-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1023.00 13.27 3.14 100.0 DNAJC5-203 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 325.00 7.80 1.00 100.0 ENST00000707189 TEC gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 244.00 0.38 0.75 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 26200.74 40.50 80.30 43.48 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 7.00 0.01 0.02 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 38029.28 58.79 116.56 60.96 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 43.00 0.07 0.13 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 193.00 0.30 0.59 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 30.00 0.05 0.09 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 62.00 0.10 0.19 100.0 MIR17HG-214 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 6125.00 5.11 18.77 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 268.00 0.22 0.82 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 24.00 0.02 0.07 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1016.00 0.85 3.11 73.04 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 110946.00 92.61 340.04 100.0 SNHG32-223 lncRNA gastroesophageal sphincter (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 33517.00 94.19 102.73 98.83 SNHG32-227 lncRNA gastroesophageal sphincter (Tissue)