ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 223.00 0.01 0.68 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 43822.00 2.07 134.31 80.5 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 1.00 0.00 0.00 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 318155.00 15.01 975.12 99.22 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 11.00 0.00 0.03 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 27.00 0.00 0.08 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 38649.00 1.82 118.46 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 527.00 0.02 1.62 82.47 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1146.08 0.05 3.51 34.57 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 356.00 0.02 1.09 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 510.00 0.02 1.56 61.45 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 419.00 0.02 1.28 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 2685.00 0.13 8.23 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 86.00 0.00 0.26 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 35474.00 27.16 108.73 100.0 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 45401.00 34.76 139.15 89.43 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 28748.00 22.01 88.11 76.7 SNHG14-315 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1149.00 0.29 3.52 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1061.00 0.27 3.25 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 203701.00 51.50 624.33 58.55 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 210.00 0.05 0.64 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 273.00 0.07 0.84 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 170746.60 43.17 523.33 45.85 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 6410.00 1.62 19.65 90.73 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 222.00 0.06 0.68 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)