ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 374.00 67.15 1.15 100.0 MEG8-242 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 1257.71 21.67 3.85 28.55 SNHG14-312 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 2912.72 50.18 8.93 66.12 SNHG14-312 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 7.00 0.12 0.02 100.0 SNHG14-312 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 35.00 0.09 0.11 100.0 MEG8-244 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 273.00 0.69 0.84 100.0 MEG8-244 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 38846.00 97.91 119.06 99.44 MEG8-244 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 213.00 0.01 0.65 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 13.00 0.00 0.04 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 1315.00 0.06 4.03 97.84 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 2145.69 0.10 6.58 64.73 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1240.00 0.06 3.80 82.78 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 954677.00 45.05 2926.01 99.83 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 544.00 0.03 1.67 66.5 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 20307.00 0.96 62.24 99.15 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 1907.00 0.09 5.84 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 615018.00 29.02 1884.98 99.96 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 987.00 0.05 3.03 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 37.00 0.00 0.11 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 234.00 0.01 0.72 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 200.00 0.01 0.61 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 875.00 0.04 2.68 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 200.00 0.01 0.61 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 53908.00 2.54 165.22 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 175.00 0.01 0.54 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)