ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 453.00 0.11 1.39 100.0 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 4431.00 1.12 13.58 95.19 SNHG5-273 lncRNA gastroesophageal sphincter (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 335.00 9.85 1.03 86.79 SNHG14-323 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 747.00 0.87 2.29 59.33 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 73040.00 85.13 223.86 95.48 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 635.00 0.74 1.95 46.86 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 4696.00 5.47 14.39 88.87 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 8.00 0.01 0.02 100.0 MEG8-251 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 12905.00 68.82 39.55 93.1 SNHG14-336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 5267.00 28.09 16.14 47.12 SNHG14-336 lncRNA gastroesophageal sphincter (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 9266.00 77.69 28.40 94.03 SNHG14-341 lncRNA gastroesophageal sphincter (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 1182.00 22.29 3.62 100.0 NCL-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 400.00 33.20 1.23 100.0 FMN2-209 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 28.00 0.56 0.09 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 148.00 2.97 0.45 25.47 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 102.00 2.05 0.31 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 530.00 10.63 1.62 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 94.00 1.89 0.29 100.0 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 433.00 8.68 1.33 74.53 LINC02739-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 4.00 100.00 0.01 100.0 MIR124-1HG-216 lncRNA gastroesophageal sphincter (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 50.00 13.16 0.15 100.0 SNHG10-212 lncRNA gastroesophageal sphincter (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 10451.93 51.36 32.03 53.37 SNHG19-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 9141.97 44.93 28.02 59.53 SNHG19-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 9489.00 87.27 29.08 100.0 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 811.00 7.46 2.49 82.76 MIR222HG-206 lncRNA gastroesophageal sphincter (Tissue)