ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 3.00 0.00 0.01 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 332.00 0.08 1.02 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 75.00 10.90 0.23 100.0 FTX-219 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 329.00 47.82 1.01 83.5 FTX-219 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 619.00 1.46 1.90 63.49 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 4020.00 9.46 12.32 83.94 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 14911.00 35.07 45.70 85.09 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 356.00 0.84 1.09 36.51 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 5232.00 12.31 16.04 70.53 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 11377.00 26.76 34.87 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 1321.00 3.11 4.05 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 1183.00 2.78 3.63 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 1060.00 1.06 3.25 78.64 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 40900.00 40.80 125.36 88.44 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 228.00 0.23 0.70 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1354.00 1.35 4.15 50.64 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 42.00 0.04 0.13 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 83.00 0.08 0.25 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 1471.00 1.47 4.51 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 116.00 0.12 0.36 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 133.00 0.13 0.41 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 5610.00 5.60 17.19 47.65 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 173.00 0.17 0.53 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 15762.00 15.72 48.31 85.32 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 5154.00 1.23 15.80 100.0 MIRLET7A1HG-203 lncRNA gastroesophageal sphincter (Tissue)