ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 7551.00 88.19 48.58 100.0 B4GALT1-203 nonsense mediated decay sigmoid colon (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 1743.00 16.00 11.21 87.59 ENST00000722183 lncRNA sigmoid colon (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 635.00 5.83 4.09 100.0 ENST00000722183 lncRNA sigmoid colon (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 226.00 2.07 1.45 100.0 ENST00000722183 lncRNA sigmoid colon (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 14.00 58.33 0.09 100.0 MIR34BHG-202 lncRNA sigmoid colon (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 9340.00 82.04 60.09 86.28 THBS3-AS1-228 lncRNA sigmoid colon (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 47.00 63.51 0.30 100.0 MIR200CHG-202 lncRNA sigmoid colon (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 1.00 1.35 0.01 100.0 MIR200CHG-202 lncRNA sigmoid colon (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 829.00 29.72 5.33 100.0 SNHG16-266 lncRNA sigmoid colon (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 157.00 5.63 1.01 100.0 SNHG16-266 lncRNA sigmoid colon (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 163.00 5.84 1.05 100.0 SNHG16-266 lncRNA sigmoid colon (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 21.00 100.00 0.14 100.0 MEG8-261 lncRNA sigmoid colon (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 134.00 27.92 0.86 100.0 NR2F2-AS1-327 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 3620.00 21.40 23.29 100.0 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 270.00 1.60 1.74 32.18 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 215.00 1.27 1.38 27.42 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 569.00 3.36 3.66 53.98 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 7236.00 42.77 46.55 100.0 ENST00000747675 lncRNA sigmoid colon (Tissue)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 5377.00 16.08 34.59 100.0 SNHG26-250 lncRNA sigmoid colon (Tissue)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 21630.00 64.68 139.15 95.5 SNHG26-250 lncRNA sigmoid colon (Tissue)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 1337.00 24.91 8.60 100.0 LINC02422-207 lncRNA sigmoid colon (Tissue)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 682.00 5.17 4.39 100.0 ENST00000753088 lncRNA sigmoid colon (Tissue)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 131.00 0.99 0.84 100.0 ENST00000753088 lncRNA sigmoid colon (Tissue)
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 1333.95 3.41 8.58 45.23 ENST00000756336 lncRNA sigmoid colon (Tissue)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 2587.51 6.62 16.65 56.89 ENST00000756336 lncRNA sigmoid colon (Tissue)