ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 402.00 7.98 2.59 68.48 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 76.00 29.12 0.49 100.0 RPSA-216 retained intron sigmoid colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2268.00 7.34 14.59 87.23 MIR99AHG-370 lncRNA sigmoid colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 26935.00 87.23 173.28 97.98 MIR99AHG-370 lncRNA sigmoid colon (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 306.00 96.53 1.97 100.0 HPS4-237 retained intron sigmoid colon (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 20.00 64.52 0.13 100.0 MEG8-253 lncRNA sigmoid colon (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 91.00 40.99 0.59 100.0 MEG9-206 lncRNA sigmoid colon (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 12.00 5.41 0.08 100.0 MEG9-206 lncRNA sigmoid colon (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 802.00 12.86 5.16 100.0 DNAJC5-203 nonsense mediated decay sigmoid colon (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 1146.00 13.63 7.37 100.0 ENST00000707189 TEC sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 22400.05 33.89 144.10 36.38 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 23.00 0.03 0.15 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 42216.50 63.86 271.59 66.17 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 452.00 0.68 2.91 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 57.00 0.09 0.37 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 87.00 0.13 0.56 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 9.00 0.01 0.06 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2204.00 1.49 14.18 71.4 SNHG32-223 lncRNA sigmoid colon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 5388.00 3.64 34.66 100.0 SNHG32-223 lncRNA sigmoid colon (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 419.00 0.28 2.70 100.0 SNHG32-223 lncRNA sigmoid colon (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 46.00 0.03 0.30 100.0 SNHG32-223 lncRNA sigmoid colon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 137459.00 92.91 884.30 100.0 SNHG32-223 lncRNA sigmoid colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 10.00 0.06 0.06 100.0 SNHG32-227 lncRNA sigmoid colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 13956.00 89.22 89.78 98.66 SNHG32-227 lncRNA sigmoid colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 732.00 4.68 4.71 100.0 SNHG32-227 lncRNA sigmoid colon (Tissue)