ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 480.00 3.16 3.09 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2561.00 16.87 16.48 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 94.83 0.62 0.61 87.8 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 36.00 0.24 0.23 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 210.00 1.38 1.35 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 3.77 0.02 0.02 3.49 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 4897.00 32.26 31.50 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 17.00 0.11 0.11 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1633.00 10.76 10.51 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 8.00 0.01 0.05 100.0 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 783.00 0.51 5.04 59.5 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 145493.00 95.04 935.99 99.46 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 616.00 0.40 3.96 45.39 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 3070.00 2.01 19.75 93.65 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 451.00 44.39 2.90 100.0 FMN2-209 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 2326.00 19.62 14.96 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 41.00 0.35 0.26 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 130.00 1.10 0.84 27.9 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 614.00 5.18 3.95 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 847.00 7.15 5.45 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 336.00 2.83 2.16 72.1 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 6.00 30.00 0.04 100.0 MIR124-1HG-216 lncRNA sigmoid colon (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 217.00 26.69 1.40 100.0 SNHG10-212 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 10.00 0.20 0.06 100.0 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 4054.00 80.50 26.08 100.0 MIR222HG-206 lncRNA sigmoid colon (Tissue)