ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 18032.00 51.20 116.00 58.23 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 274.00 26.15 1.76 100.0 C19orf48P-203 retained intron sigmoid colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 17.00 1.62 0.11 100.0 C19orf48P-203 retained intron sigmoid colon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 6917739.00 76.04 44503.24 77.25 CARMN-209 lncRNA sigmoid colon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 424.00 49.53 2.73 100.0 PPFIA1P1-201 processed pseudogene sigmoid colon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 803.00 38.55 5.17 100.0 SNORD114-21-201 snoRNA sigmoid colon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 928.00 44.55 5.97 100.0 SNORD114-21-201 snoRNA sigmoid colon (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 2837.00 96.50 18.25 100.0 MIR98-201 miRNA sigmoid colon (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 439.00 71.27 2.82 100.0 SNORD113-5-201 snoRNA sigmoid colon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 127.00 90.71 0.82 100.0 MIR15A-201 miRNA sigmoid colon (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 399.00 59.91 2.57 100.0 SNHG21-206 retained intron sigmoid colon (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 27282.00 48.43 175.51 97.88 MIR486-1-201 miRNA sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 3616.00 47.88 23.26 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 185.00 2.45 1.19 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 585.00 7.75 3.76 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 1036.00 13.72 6.66 48.37 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 14.00 0.04 0.09 100.0 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 11941.96 35.24 76.83 43.91 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 22.00 0.06 0.14 100.0 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 421.00 1.24 2.71 100.0 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 15643.50 46.16 100.64 57.53 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 6.00 100.00 0.04 100.0 MIR7974-201 miRNA sigmoid colon (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 442.00 0.85 2.84 100.0 U2.3-201 snRNA sigmoid colon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 6148.00 11.79 39.55 20.12 U2.3-201 snRNA sigmoid colon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 4666.00 8.95 30.02 100.0 U2.3-201 snRNA sigmoid colon (Tissue)