ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 339361.00 85.29 2183.18 91.37 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 55694.00 14.00 358.29 88.73 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 26.00 0.62 0.17 100.0 MIR133A1HG-202 lncRNA sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2330.00 3.33 14.99 62.97 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 7285.00 10.42 46.87 45.79 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 674.00 0.96 4.34 100.0 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 47448.00 67.90 305.24 96.1 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 10004.00 14.32 64.36 96.4 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 25.00 78.12 0.16 78.12 ENST00000582320 lncRNA sigmoid colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 2867.00 16.68 18.44 100.0 RPL17-214 retained intron sigmoid colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 6445.54 37.50 41.47 51.86 RPL17-214 retained intron sigmoid colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 7128.96 41.48 45.86 52.37 RPL17-214 retained intron sigmoid colon (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 316442.00 98.92 2035.74 99.86 SNORD43-201 snoRNA sigmoid colon (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 23.00 0.01 0.15 100.0 SNORD43-201 snoRNA sigmoid colon (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 63.00 16.98 0.41 100.0 MIR151B-201 miRNA sigmoid colon (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 13.00 0.40 0.08 100.0 SNORD3A-201 snoRNA sigmoid colon (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2610.00 22.72 16.79 100.0 NSRP1-214 protein coding sigmoid colon (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 7444.00 64.79 47.89 90.18 NSRP1-214 protein coding sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 3164.00 34.07 20.35 97.5 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1933.00 20.81 12.44 78.51 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1905.00 20.51 12.26 94.63 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 819.00 8.82 5.27 74.45 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 3222.00 55.62 20.73 100.0 ODAD3-204 nonsense mediated decay sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1279.00 3.63 8.23 100.0 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 60.00 0.17 0.39 100.0 VMP1-217 retained intron sigmoid colon (Tissue)