ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 3267.00 65.91 21.02 100.0 RPL4-207 retained intron sigmoid colon (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 355.00 7.16 2.28 100.0 RPL4-207 retained intron sigmoid colon (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 24293.00 70.78 156.28 96.12 ENST00000565336 lncRNA sigmoid colon (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 6198.00 18.06 39.87 82.74 ENST00000565336 lncRNA sigmoid colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 2358.00 28.42 15.17 100.0 RBMX-210 retained intron sigmoid colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2784.00 33.56 17.91 100.0 RBMX-210 retained intron sigmoid colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 52.00 0.63 0.33 16.77 RBMX-210 retained intron sigmoid colon (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 103.00 50.74 0.66 100.0 RPL4-214 retained intron sigmoid colon (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 8378.92 27.19 53.90 43.99 POLG-DT-202 lncRNA sigmoid colon (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 13022.84 42.26 83.78 78.16 POLG-DT-202 lncRNA sigmoid colon (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 1612.00 5.23 10.37 100.0 POLG-DT-202 lncRNA sigmoid colon (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 549.00 15.16 3.53 100.0 ENST00000570843 lncRNA sigmoid colon (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1805.00 61.44 11.61 100.0 MIR497HG-207 lncRNA sigmoid colon (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 34807.00 96.31 223.92 96.77 MIR22HG-212 lncRNA sigmoid colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 463.00 50.94 2.98 57.3 SNORD53B-201 snoRNA sigmoid colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 345.00 37.95 2.22 42.7 SNORD53B-201 snoRNA sigmoid colon (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 79.00 56.83 0.51 100.0 ENST00000578036 lncRNA sigmoid colon (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 473.00 90.27 3.04 100.0 RPL23A-207 protein coding sigmoid colon (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 614.00 96.39 3.95 100.0 MIR744-201 miRNA sigmoid colon (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 691.00 52.63 4.45 100.0 MIR378C-201 miRNA sigmoid colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 5.00 1.55 0.03 5.15 MIR142HG-201 lncRNA sigmoid colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 200.00 62.11 1.29 78.12 MIR142HG-201 lncRNA sigmoid colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 6.00 1.86 0.04 100.0 MIR142HG-201 lncRNA sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 213.66 0.05 1.37 46.15 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 239.77 0.06 1.54 64.63 RPL23A-208 retained intron sigmoid colon (Tissue)