ENCFF728EUS

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR968DMR
Description: Part of ENCODE experiment ENCSR968DMR. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 3839.00 6.71 24.70 100.0 MIR151A-201 miRNA sigmoid colon (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 47826.00 83.56 307.67 91.24 MIR151A-201 miRNA sigmoid colon (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 38889.00 99.62 250.18 100.0 DENND3-221 protein coding sigmoid colon (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 961.00 1.75 6.18 44.91 WDR74-204 protein coding sigmoid colon (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 1867.00 3.39 12.01 77.66 WDR74-204 protein coding sigmoid colon (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 1179.00 2.14 7.58 55.09 WDR74-204 protein coding sigmoid colon (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 203.00 0.37 1.31 100.0 WDR74-204 protein coding sigmoid colon (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 740.00 1.34 4.76 100.0 WDR74-204 protein coding sigmoid colon (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 534.00 0.97 3.44 100.0 WDR74-204 protein coding sigmoid colon (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 95.00 11.24 0.61 100.0 SCARNA9-201 lncRNA sigmoid colon (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 25638.00 96.46 164.93 100.0 TAF1D-215 retained intron sigmoid colon (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 787173.00 73.15 5064.05 74.74 ENST00000548801 lncRNA sigmoid colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 676.00 23.65 4.35 100.0 ENST00000554988 lncRNA sigmoid colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 467.00 16.34 3.00 100.0 ENST00000554988 lncRNA sigmoid colon (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 17.00 0.09 0.11 100.0 SNHG14-220 retained intron sigmoid colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 680.00 3.78 4.37 100.0 SNHG14-220 retained intron sigmoid colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 240.00 1.33 1.54 100.0 SNHG14-220 retained intron sigmoid colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 16238.00 90.27 104.46 100.0 SNHG14-220 retained intron sigmoid colon (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 4336.00 99.40 27.89 100.0 TEKT4P2-201 transcribed unprocessed pseudogene sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 265.00 0.47 1.70 100.0 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 38.00 0.07 0.24 100.0 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 5.00 0.01 0.03 100.0 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 660.00 1.17 4.25 100.0 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 52933.00 94.00 340.53 98.32 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 93.00 0.36 0.60 100.0 ENST00000563103 lncRNA sigmoid colon (Tissue)