ENCFF720JFQ

Library Details

Organism: Homo Sapiens
Biosample: mesendoderm (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR494ATA
Description: Part of ENCODE experiment ENCSR494ATA.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 61.00 31.61 0.56 100.0 ODAD3-204 nonsense mediated decay mesendoderm (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 8582.00 2.07 78.83 100.0 VMP1-217 retained intron mesendoderm (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 31.00 0.01 0.28 100.0 VMP1-217 retained intron mesendoderm (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 355197.00 85.63 3262.56 89.0 VMP1-217 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 4213.00 7.30 38.70 100.0 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 19414.97 33.62 178.33 64.05 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 26319.06 45.58 241.75 65.79 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 173.00 0.30 1.59 61.57 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 4435.00 7.68 40.74 100.0 C19orf48P-203 retained intron mesendoderm (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 9612.00 80.03 88.29 100.0 ENST00000597420 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 22.00 12.87 0.20 100.0 RPS11-206 retained intron mesendoderm (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 3080.00 67.03 28.29 68.34 CARMN-209 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 4.00 0.56 0.04 100.0 ENST00000602478 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 29.00 29.59 0.27 100.0 PPFIA1P1-201 processed pseudogene mesendoderm (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 5.00 14.29 0.05 100.0 SNORD114-21-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 14.00 40.00 0.13 100.0 SNORD114-21-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 39.00 67.24 0.36 100.0 MIR98-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 10.00 83.33 0.09 100.0 SNORD113-5-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 1612.00 93.50 14.81 100.0 MIR15A-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 6.00 60.00 0.06 100.0 MIR376C-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 1355.00 54.51 12.45 100.0 SNHG21-206 retained intron mesendoderm (In vitro differentiated cells)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 2.00 0.53 0.02 100.0 SNORD11B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 97.00 13.04 0.89 100.0 SNORD91B-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 50.00 40.98 0.46 100.0 MIR219A2HG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 640.00 35.09 5.88 97.71 SNORD91A-201 snoRNA mesendoderm (In vitro differentiated cells)