ENCFF720JFQ

Library Details

Organism: Homo Sapiens
Biosample: mesendoderm (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR494ATA
Description: Part of ENCODE experiment ENCSR494ATA.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 3378.00 62.24 31.03 93.34 RPL23A-208 retained intron mesendoderm (In vitro differentiated cells)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 2.00 0.54 0.02 100.0 MIR133A1HG-202 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 109.00 0.58 1.00 100.0 RPL17-211 retained intron mesendoderm (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 11.00 0.06 0.10 10.48 RPL17-211 retained intron mesendoderm (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 20.00 0.11 0.18 2.43 RPL17-211 retained intron mesendoderm (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 12695.00 67.33 116.61 99.91 RPL17-211 retained intron mesendoderm (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 1605.00 8.51 14.74 99.63 RPL17-211 retained intron mesendoderm (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 11.00 8.80 0.10 91.67 ENST00000582320 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 96.00 76.80 0.88 100.0 ENST00000582320 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 4.00 3.20 0.04 100.0 ENST00000582320 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 452.00 9.23 4.15 100.0 RPL17-214 retained intron mesendoderm (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 415.33 8.48 3.81 22.51 RPL17-214 retained intron mesendoderm (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 1712.42 34.98 15.73 73.09 RPL17-214 retained intron mesendoderm (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 5878.00 5.43 53.99 100.0 SNORD43-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 92579.00 85.54 850.36 99.69 SNORD43-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 652.00 0.60 5.99 100.0 SNORD43-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 1509.00 92.86 13.86 100.0 MIR151B-201 miRNA mesendoderm (In vitro differentiated cells)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 9.00 0.09 0.08 100.0 SNORD3A-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 89.00 16.42 0.82 100.0 SNORD92-201 snoRNA mesendoderm (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 42139.00 65.17 387.06 100.0 NSRP1-214 protein coding mesendoderm (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 17389.00 26.89 159.72 93.48 NSRP1-214 protein coding mesendoderm (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1735.00 9.50 15.94 50.95 MIR23AHG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 10848.00 59.39 99.64 96.97 MIR23AHG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 370.00 2.03 3.40 64.57 MIR23AHG-201 lncRNA mesendoderm (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 462.00 2.53 4.24 74.76 MIR23AHG-201 lncRNA mesendoderm (In vitro differentiated cells)