ENCFF714LDG

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1013.00 60.80 6.71 100.0 SNORD111B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 215.00 18.74 1.42 100.0 RNU2-36P-201 snRNA trophoblast cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 968.00 17.71 6.41 100.0 SNORD19C-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 2073.00 37.93 13.73 93.04 SNORD19C-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 371.00 2.29 2.46 97.89 SNORD12B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 9158.00 56.43 60.66 100.0 SNORD12B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 4.00 0.02 0.03 100.0 SNORD12B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 1.00 0.07 0.01 100.0 Y_RNA.609-201 misc RNA trophoblast cell (In vitro differentiated cells)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 293.00 49.08 1.94 100.0 Y_RNA.612-201 misc RNA trophoblast cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 16.00 3.08 0.11 100.0 SNORD71-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 108.00 20.81 0.72 100.0 SNORD71-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 17716.00 71.49 117.35 78.43 MIR194-2HG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 6030.00 24.33 39.94 63.02 MIR194-2HG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 7799.00 99.80 51.66 100.0 RPS7P15-201 processed pseudogene trophoblast cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 220.00 1.30 1.46 100.0 SNORD62B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 2.00 0.01 0.01 100.0 SNORD62B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 1237.00 7.30 8.19 100.0 SNORD62B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 13227.00 78.03 87.62 91.65 SNORD62B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1.00 0.01 0.01 100.0 SNORD62B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 8644.00 97.57 57.26 100.0 MRPL32-203 nonsense mediated decay trophoblast cell (In vitro differentiated cells)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 1944.00 98.68 12.88 100.0 ENST00000436739 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 17.00 1.84 0.11 40.48 TMEM107-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 1.00 0.11 0.01 100.0 TMEM107-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 140.00 15.15 0.93 100.0 TMEM107-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 2.00 0.22 0.01 100.0 TMEM107-204 protein coding trophoblast cell (In vitro differentiated cells)