ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 9188.04 5.75 51.68 43.65 5S_rRNA.20-201 rRNA pseudogene upper lobe of left lung (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 235.00 9.26 1.32 100.0 HSPA9-211 retained intron upper lobe of left lung (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1012.00 39.86 5.69 72.86 HSPA9-211 retained intron upper lobe of left lung (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 5352.00 74.87 30.11 100.0 DNM3OS-205 lncRNA upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1321.00 0.57 7.43 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 190.00 0.08 1.07 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 3611.00 1.55 20.31 92.16 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 130.00 0.06 0.73 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 2913.00 1.25 16.39 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 61.00 0.03 0.34 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 89961.00 38.50 506.05 99.83 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 488.00 0.21 2.75 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 5992.00 2.56 33.71 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1403.00 0.60 7.89 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 168.00 0.07 0.95 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 5081.00 2.17 28.58 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 3.00 0.00 0.02 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 925.00 0.40 5.20 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1681.00 0.72 9.46 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 13998.00 5.99 78.74 87.17 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 15496.00 6.63 87.17 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 22.00 0.01 0.12 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 145.00 0.06 0.82 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 4003.00 1.71 22.52 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 71851.00 30.75 404.18 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)