ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 442.29 0.16 2.53 65.62 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 175.00 0.06 1.00 100.0 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 366.06 0.13 2.10 45.87 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 909.00 0.33 5.21 100.0 RNA5SP202-201 rRNA pseudogene stomach (Tissue)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 5242.00 70.18 30.04 100.0 SNORD114-9-201 snoRNA stomach (Tissue)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1582.00 21.18 9.06 100.0 SNORD114-9-201 snoRNA stomach (Tissue)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 1742.00 13.99 9.98 100.0 Y_RNA.234-201 misc RNA stomach (Tissue)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 27.00 0.51 0.15 100.0 RNA5SP141-201 rRNA pseudogene stomach (Tissue)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 529.00 87.44 3.03 100.0 SNORD114-15-201 snoRNA stomach (Tissue)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 199.00 22.90 1.14 100.0 ENST00000364722 snoRNA stomach (Tissue)
ENST00000364830.3 ENST00000364830.3_3_67_+ 3–67 225.00 41.67 1.29 100.0 SNORD113-3-201 snoRNA stomach (Tissue)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 5065.00 68.31 29.02 100.0 SNORD52-201 snoRNA stomach (Tissue)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 1021.00 34.01 5.85 100.0 SNORD114-3-201 snoRNA stomach (Tissue)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 1598.00 53.23 9.16 100.0 SNORD114-3-201 snoRNA stomach (Tissue)
ENST00000364969.1 ENST00000364969.1_4_62_+ 4–62 23.00 0.77 0.13 100.0 SNORD114-3-201 snoRNA stomach (Tissue)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 398.00 11.03 2.28 100.0 RNA5SP298-201 rRNA pseudogene stomach (Tissue)
ENST00000365080.1 ENST00000365080.1_3_67_+ 3–67 953.00 84.26 5.46 100.0 SNORD113-9-201 snoRNA stomach (Tissue)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 34619.00 81.37 198.36 100.0 SNORD38A-201 snoRNA stomach (Tissue)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 3584.00 8.42 20.54 100.0 SNORD38A-201 snoRNA stomach (Tissue)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 649.00 1.53 3.72 100.0 SNORD38A-201 snoRNA stomach (Tissue)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 8792.00 90.82 50.38 97.55 SNORD114-20-201 snoRNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 93.00 7.71 0.53 55.69 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 69.00 5.72 0.40 54.33 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 27.00 2.24 0.15 100.0 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 230.00 19.06 1.32 79.86 7SK.1-201 misc RNA stomach (Tissue)