ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 289.00 10.84 1.66 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 649.00 24.34 3.72 87.11 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 422.00 0.09 2.42 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 486.00 25.47 2.78 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 1515.00 13.75 8.68 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 60.00 0.54 0.34 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 1095.00 76.36 6.27 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 594.00 43.11 3.40 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 210.00 24.31 1.20 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 622.00 0.58 3.56 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 473.00 0.44 2.71 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 1245.00 1.17 7.13 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 490.00 0.46 2.81 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 370.00 0.35 2.12 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 227.00 0.21 1.30 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 274.00 0.06 1.57 67.82 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 457.00 0.09 2.62 60.05 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 7453.00 1.52 42.70 95.59 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 2838.00 17.25 16.26 81.46 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 330.00 87.07 1.89 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 161.00 13.52 0.92 81.31 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 52.00 88.14 0.30 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 288.00 1.09 1.65 90.57 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 30.00 0.11 0.17 9.43 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 9696.00 36.77 55.56 59.2 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA stomach (Tissue)