ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 385.28 4.76 2.21 57.85 ENST00000823279 lncRNA stomach (Tissue)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 296.73 3.66 1.70 45.1 ENST00000823279 lncRNA stomach (Tissue)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 202.23 2.50 1.16 21.63 ENST00000823279 lncRNA stomach (Tissue)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 283.00 3.49 1.62 83.48 ENST00000823279 lncRNA stomach (Tissue)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 505.90 6.25 2.90 29.21 ENST00000823279 lncRNA stomach (Tissue)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 1111.55 13.72 6.37 72.56 ENST00000823801 lncRNA stomach (Tissue)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 1310.00 59.98 7.51 69.72 ENST00000827714 lncRNA stomach (Tissue)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 569.00 26.05 3.26 30.28 ENST00000827714 lncRNA stomach (Tissue)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 1031.00 1.77 5.91 100.0 GAS5-377 lncRNA stomach (Tissue)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 30.00 0.05 0.17 100.0 GAS5-377 lncRNA stomach (Tissue)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 3752.00 6.45 21.50 100.0 GAS5-377 lncRNA stomach (Tissue)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 51474.00 88.46 294.94 100.0 GAS5-377 lncRNA stomach (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 33.00 0.76 0.19 100.0 ZFAS1-238 lncRNA stomach (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 83.00 1.91 0.48 100.0 ZFAS1-238 lncRNA stomach (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 2456.00 56.62 14.07 100.0 ZFAS1-238 lncRNA stomach (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 9276.00 88.70 53.15 100.0 ZFAS1-242 lncRNA stomach (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 794.00 30.37 4.55 100.0 ENST00000837997 lncRNA stomach (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 826.00 31.60 4.73 100.0 ENST00000837997 lncRNA stomach (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 11624.00 71.81 66.60 79.97 ENST00000839036 lncRNA stomach (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 543.00 15.22 3.11 100.0 ENST00000849527 lncRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 28222.00 87.58 161.71 98.04 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 73.00 0.23 0.42 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 110.00 0.28 0.63 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 1761.00 71.12 10.09 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 61.00 2.46 0.35 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA stomach (Tissue)