ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 63.00 0.05 0.36 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 7378.98 5.65 42.28 54.43 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1028.00 2.33 5.89 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 21.00 0.05 0.12 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 7982.00 18.06 45.74 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 2869.00 6.49 16.44 100.0 U2.3-201 snRNA stomach (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1405.00 3.95 8.05 100.0 U2.6-201 snRNA stomach (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 139.00 0.17 0.80 8.36 ENST00000619323 lncRNA stomach (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 77251.00 94.37 442.64 97.51 ENST00000619323 lncRNA stomach (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 1259.00 29.76 7.21 100.0 SCARNA4-202 scaRNA stomach (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 1323.00 81.67 7.58 100.0 ENST00000625572 miRNA stomach (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 15176.00 76.48 86.96 100.0 ENST00000630615 snoRNA stomach (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 115.00 21.10 0.66 100.0 DMRT2-209 protein coding stomach (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 161.00 29.54 0.92 100.0 DMRT2-209 protein coding stomach (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 3230.00 48.89 18.51 100.0 SNORD98-201 snoRNA stomach (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 705.00 10.67 4.04 100.0 SNORD98-201 snoRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 53037.44 46.67 303.90 52.74 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 18.18 0.02 0.10 31.34 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 10.00 0.01 0.06 100.0 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 42.60 0.04 0.24 73.45 MIR106AHG-201 lncRNA stomach (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 181.00 35.01 1.04 100.0 MEG8-222 lncRNA stomach (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 112.00 21.66 0.64 100.0 MEG8-222 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 116.00 2.99 0.66 100.0 SNHG14-224 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 980.00 25.26 5.62 88.77 SNHG14-224 lncRNA stomach (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 531.00 13.69 3.04 64.91 SNHG14-224 lncRNA stomach (Tissue)