ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 14590.12 7.82 83.60 50.46 5S_rRNA.20-201 rRNA pseudogene stomach (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1220.00 12.23 6.99 100.0 HSPA9-211 retained intron stomach (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 3454.00 34.62 19.79 60.93 HSPA9-211 retained intron stomach (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 7595.00 74.15 43.52 100.0 DNM3OS-205 lncRNA stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1240.00 0.17 7.11 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1457.00 0.20 8.35 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 9009.00 1.23 51.62 95.19 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 77.00 0.01 0.44 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 123.00 0.02 0.70 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 409.00 0.06 2.34 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 466650.00 63.76 2673.86 99.84 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1163.00 0.16 6.66 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 41626.00 5.69 238.51 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 2540.00 0.35 14.55 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 328.00 0.04 1.88 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 17642.00 2.41 101.09 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 67.00 0.01 0.38 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 2879.00 0.39 16.50 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 3296.00 0.45 18.89 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 10054.00 1.37 57.61 88.1 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 6411.00 0.88 36.73 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 107.00 0.01 0.61 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 1077.00 0.15 6.17 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 5829.00 0.80 33.40 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 129878.00 17.75 744.19 100.0 GAS5-230 retained intron stomach (Tissue)