ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 3228.00 22.57 18.50 91.63 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 2121.00 14.83 12.15 76.38 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 46.00 23.96 0.26 100.0 ODAD3-204 nonsense mediated decay stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 17272.00 11.88 98.97 100.0 VMP1-217 retained intron stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 511.00 0.35 2.93 100.0 VMP1-217 retained intron stomach (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 83026.00 57.08 475.73 71.03 VMP1-217 retained intron stomach (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1124.00 35.63 6.44 100.0 C19orf48P-203 retained intron stomach (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 176.00 5.58 1.01 100.0 C19orf48P-203 retained intron stomach (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 2672540.00 73.64 15313.39 75.13 CARMN-209 lncRNA stomach (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 257.00 47.59 1.47 100.0 PPFIA1P1-201 processed pseudogene stomach (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1056.00 37.93 6.05 100.0 SNORD114-21-201 snoRNA stomach (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 1339.00 48.10 7.67 100.0 SNORD114-21-201 snoRNA stomach (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 5738.00 94.66 32.88 100.0 MIR98-201 miRNA stomach (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 109.00 57.67 0.62 100.0 SNORD113-5-201 snoRNA stomach (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 587.00 98.99 3.36 100.0 MIR15A-201 miRNA stomach (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 5.00 45.45 0.03 100.0 MIR376C-201 miRNA stomach (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 1305.00 42.41 7.48 100.0 SNHG21-206 retained intron stomach (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 68492.00 47.70 392.45 97.11 MIR486-1-201 miRNA stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 5290.00 41.26 30.31 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 235.00 1.83 1.35 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 1963.00 15.31 11.25 100.0 NOP56-219 retained intron stomach (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 1661.00 12.96 9.52 56.11 NOP56-219 retained intron stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 6130.23 4.69 35.13 45.22 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 86.00 0.07 0.49 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 75391.00 57.70 431.98 100.0 RNA5-8SN2-201 rRNA stomach (Tissue)