ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 16.00 0.12 0.09 100.0 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 393.00 2.96 2.25 10.34 MIR142HG-201 lncRNA stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 897.05 0.05 5.14 62.34 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 518.51 0.03 2.97 44.32 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1503557.00 82.79 8615.23 88.95 RPL23A-208 retained intron stomach (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 304369.00 16.76 1744.00 91.62 RPL23A-208 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2449.00 2.69 14.03 71.05 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 10092.00 11.07 57.83 48.83 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 978.00 1.07 5.60 100.0 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 66141.00 72.52 378.98 97.03 RPL17-211 retained intron stomach (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 5643.00 6.19 32.33 94.27 RPL17-211 retained intron stomach (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 162.00 35.92 0.93 45.51 ENST00000582320 lncRNA stomach (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 22.00 4.88 0.13 100.0 ENST00000582320 lncRNA stomach (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 2.00 0.44 0.01 100.0 ENST00000582320 lncRNA stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 5748.00 13.16 32.94 100.0 RPL17-214 retained intron stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 19495.56 44.64 111.71 57.73 RPL17-214 retained intron stomach (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 15957.00 36.54 91.43 45.39 RPL17-214 retained intron stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 667098.00 98.88 3822.40 99.91 SNORD43-201 snoRNA stomach (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 91.00 0.01 0.52 100.0 SNORD43-201 snoRNA stomach (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 155.00 38.46 0.89 100.0 MIR151B-201 miRNA stomach (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 497.00 4.86 2.85 100.0 SNORD3A-201 snoRNA stomach (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 3320.00 21.41 19.02 100.0 NSRP1-214 protein coding stomach (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 5931.00 38.25 33.98 58.93 NSRP1-214 protein coding stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2364.00 16.53 13.55 94.71 MIR23AHG-201 lncRNA stomach (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 3013.00 21.06 17.26 86.01 MIR23AHG-201 lncRNA stomach (Tissue)