ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 339.00 0.95 1.94 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 991.00 2.79 5.68 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 549.00 1.47 3.15 100.0 ENST00000563103 lncRNA stomach (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 7713.00 44.49 44.19 100.0 RPL4-207 retained intron stomach (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 2330.00 13.44 13.35 100.0 RPL4-207 retained intron stomach (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 351629.00 90.81 2014.80 95.57 ENST00000565336 lncRNA stomach (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 12252.00 3.16 70.20 72.63 ENST00000565336 lncRNA stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 5345.00 29.96 30.63 100.0 RBMX-210 retained intron stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 5995.00 33.60 34.35 100.0 RBMX-210 retained intron stomach (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 25.00 0.14 0.14 5.84 RBMX-210 retained intron stomach (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 636.00 21.94 3.64 100.0 RPL4-214 retained intron stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 487.00 0.99 2.79 100.0 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 5806.91 11.82 33.27 15.09 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 34474.00 70.16 197.53 85.14 POLG-DT-202 lncRNA stomach (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 228.00 6.12 1.31 100.0 ENST00000570843 lncRNA stomach (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 2348.00 79.84 13.45 100.0 MIR497HG-207 lncRNA stomach (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 87122.00 96.26 499.20 96.87 MIR22HG-212 lncRNA stomach (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 992.00 46.99 5.68 56.14 SNORD53B-201 snoRNA stomach (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 46.00 2.18 0.26 100.0 SNORD53B-201 snoRNA stomach (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 775.00 36.71 4.44 43.86 SNORD53B-201 snoRNA stomach (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 640.00 83.55 3.67 100.0 ENST00000578036 lncRNA stomach (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 791.00 80.96 4.53 100.0 RPL23A-207 protein coding stomach (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 530.00 89.98 3.04 100.0 MIR744-201 miRNA stomach (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 789.00 76.68 4.52 100.0 MIR378C-201 miRNA stomach (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 10216.00 76.97 58.54 84.38 MIR142HG-201 lncRNA stomach (Tissue)