ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 295.00 0.15 1.69 71.95 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 7190.00 3.66 41.20 78.53 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 121565.00 61.81 696.56 99.78 RNY4-201 misc RNA stomach (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 21550.00 85.89 123.48 94.1 MIR3142HG-201 lncRNA stomach (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 103728.00 83.90 594.35 89.41 MIR151A-201 miRNA stomach (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 5629.00 4.55 32.25 100.0 MIR151A-201 miRNA stomach (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 4760.00 99.69 27.27 100.0 DENND3-221 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 1108.00 2.22 6.35 40.39 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 421.00 0.84 2.41 100.0 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 3050.00 6.11 17.48 100.0 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 7891.00 15.81 45.21 74.7 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 2224.00 4.45 12.74 100.0 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 1635.00 3.27 9.37 59.61 WDR74-204 protein coding stomach (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 534.00 30.14 3.06 100.0 SCARNA9-201 lncRNA stomach (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 45675.00 94.82 261.71 100.0 TAF1D-215 retained intron stomach (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 552174.00 77.03 3163.90 78.75 ENST00000548801 lncRNA stomach (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 555.00 14.59 3.18 100.0 ENST00000554988 lncRNA stomach (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 611.00 16.07 3.50 100.0 ENST00000554988 lncRNA stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 37378.00 93.71 214.17 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 31.00 0.08 0.18 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 655.00 1.64 3.75 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 271.00 0.68 1.55 100.0 SNHG14-220 retained intron stomach (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 2011.00 99.70 11.52 100.0 TEKT4P2-201 transcribed unprocessed pseudogene stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1274.00 3.59 7.30 100.0 RPL4-202 retained intron stomach (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 26227.00 73.86 150.28 92.85 RPL4-202 retained intron stomach (Tissue)