ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 81775.00 7.57 468.56 83.52 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 436805.00 40.46 2502.85 99.13 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 55766.00 5.17 319.53 49.97 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 15.00 0.00 0.09 100.0 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 267267.00 24.76 1531.41 85.71 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 21.00 7.22 0.12 100.0 RPS8-207 protein coding CDS not defined stomach (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 204.00 11.68 1.17 100.0 RPL7A-206 protein coding CDS not defined stomach (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 672.00 38.49 3.85 100.0 RPL7A-206 protein coding CDS not defined stomach (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 205.00 11.74 1.17 100.0 RPL7A-206 protein coding CDS not defined stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 43829.00 6.37 251.14 95.59 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 627543.00 91.14 3595.76 96.13 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 4.00 0.00 0.02 100.0 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 10448.00 1.52 59.87 100.0 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1435.00 0.21 8.22 100.0 RPL21-209 retained intron stomach (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 31.00 26.27 0.18 100.0 GABRE-209 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1623.00 17.43 9.30 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 340.00 3.65 1.95 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 90.00 0.97 0.52 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 302.00 6.14 1.73 100.0 RPL7A-207 protein coding CDS not defined stomach (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1618.00 32.89 9.27 100.0 RPL7A-207 protein coding CDS not defined stomach (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1613.00 86.67 9.24 100.0 RGS11-208 retained intron stomach (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 3832.00 60.40 21.96 81.48 NOP56-217 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 487.00 2.85 2.79 35.6 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 1816.00 10.64 10.41 84.15 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 176.00 1.03 1.01 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)