ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 1.00 0.02 0.01 5.56 TMEM107-204 protein coding stomach (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2807.00 59.01 16.08 88.72 TMEM107-204 protein coding stomach (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 507.00 10.66 2.91 100.0 TMEM107-204 protein coding stomach (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 823.00 45.55 4.72 100.0 SNHG16-201 lncRNA stomach (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 22060.00 81.93 126.40 95.08 SNORD105B-201 snoRNA stomach (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 479.00 27.26 2.74 50.58 SNORD121B-201 snoRNA stomach (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 260.00 32.06 1.49 100.0 SNORD127-201 snoRNA stomach (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 10094.00 94.41 57.84 100.0 SNORD42B-201 snoRNA stomach (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 514.00 7.67 2.95 100.0 RNY4P25-201 misc RNA stomach (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 405.00 73.24 2.32 100.0 SNORD121A-201 snoRNA stomach (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1328.00 91.78 7.61 100.0 SNORD126-201 snoRNA stomach (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 3453.00 61.65 19.79 100.0 SNHG12-201 retained intron stomach (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 5629.00 95.42 32.25 100.0 SMC1A-204 retained intron stomach (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1259.00 42.75 7.21 100.0 DDX39B-219 retained intron stomach (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 411.00 13.96 2.35 100.0 DDX39B-219 retained intron stomach (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 2713.00 73.09 15.55 100.0 RPS8-206 protein coding CDS not defined stomach (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 5140.00 49.26 29.45 100.0 RPL13-207 retained intron stomach (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 549.00 5.26 3.15 99.82 RPL13-207 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 436805.00 40.46 2502.85 99.13 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 55766.00 5.17 319.53 49.97 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 15.00 0.00 0.09 100.0 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 267267.00 24.76 1531.41 85.71 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1135.00 0.11 6.50 57.76 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2799.00 0.26 16.04 37.86 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 2281.00 0.21 13.07 59.79 EIF4A2-219 retained intron stomach (Tissue)