ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 21.00 24.42 0.12 100.0 MIR708-201 miRNA stomach (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 18.00 100.00 0.10 100.0 MIR509-3-201 miRNA stomach (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 6.00 100.00 0.03 100.0 MIR543-201 miRNA stomach (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 6.00 100.00 0.03 100.0 MIR301B-201 miRNA stomach (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 496.00 44.29 2.84 74.81 RNU1-82P-201 snRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 359.00 1.36 2.06 100.0 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1949.00 7.36 11.17 100.0 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 12002.00 45.34 68.77 73.83 SNORD66-201 snoRNA stomach (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 109.00 55.61 0.62 100.0 U3.17-201 snoRNA stomach (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 7855.00 91.53 45.01 100.0 SNORD17-201 snoRNA stomach (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 414.00 44.23 2.37 100.0 SNORD72-201 snoRNA stomach (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 164.00 46.33 0.94 100.0 SNORD70B-201 snoRNA stomach (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 3817.00 59.88 21.87 91.87 RNY4P18-201 misc RNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 8750.00 11.35 50.14 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 2626.00 3.41 15.05 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 33122.00 42.96 189.79 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 25894.00 33.59 148.37 100.0 SNORD69-201 snoRNA stomach (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 21349.00 79.64 122.33 89.59 B4GALNT2-202 protein coding stomach (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 230.00 0.86 1.32 100.0 B4GALNT2-202 protein coding stomach (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 1228.00 92.05 7.04 100.0 NDE1-202 protein coding stomach (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 30.00 69.77 0.17 100.0 MIR450B-201 miRNA stomach (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 129.00 49.05 0.74 100.0 MIR887-201 miRNA stomach (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 144.00 87.80 0.83 100.0 MIR889-201 miRNA stomach (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 22.00 64.71 0.13 100.0 MIR548K-201 miRNA stomach (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 1132.00 61.49 6.49 100.0 MIR320B2-201 miRNA stomach (Tissue)