ENCFF682YQJ

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR593MVW
Description: Part of ENCODE experiment ENCSR593MVW. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1671.00 28.95 8.14 100.0 ENST00000570843 lncRNA spleen (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 3652.00 82.94 17.78 100.0 MIR497HG-207 lncRNA spleen (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 39954.00 95.73 194.56 96.35 MIR22HG-212 lncRNA spleen (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 726.00 31.93 3.54 35.66 SNORD53B-201 snoRNA spleen (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 7.00 0.31 0.03 100.0 SNORD53B-201 snoRNA spleen (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 1310.00 57.61 6.38 64.34 SNORD53B-201 snoRNA spleen (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 66.00 47.48 0.32 100.0 ENST00000578036 lncRNA spleen (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 1155.00 85.37 5.62 100.0 RPL23A-207 protein coding spleen (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 424.00 94.43 2.06 100.0 MIR744-201 miRNA spleen (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 75.00 80.65 0.37 100.0 MIR378C-201 miRNA spleen (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 22140.00 82.42 107.81 91.26 MIR142HG-201 lncRNA spleen (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 58.00 0.22 0.28 100.0 MIR142HG-201 lncRNA spleen (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 773.00 2.88 3.76 14.48 MIR142HG-201 lncRNA spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 239.43 0.04 1.17 51.27 RPL23A-208 retained intron spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 200.81 0.03 0.98 50.84 RPL23A-208 retained intron spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 499133.00 86.32 2430.52 91.01 RPL23A-208 retained intron spleen (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 75261.00 13.02 366.48 90.03 RPL23A-208 retained intron spleen (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 5.00 7.94 0.02 100.0 MIR133A1HG-202 lncRNA spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 5155.00 5.68 25.10 75.95 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 12148.00 13.39 59.15 48.69 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1171.00 1.29 5.70 100.0 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 61668.00 67.98 300.29 95.79 RPL17-211 retained intron spleen (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 6062.00 6.68 29.52 89.53 RPL17-211 retained intron spleen (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 315.00 22.68 1.53 33.37 ENST00000582320 lncRNA spleen (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 196.00 14.11 0.95 100.0 ENST00000582320 lncRNA spleen (Tissue)